Lee G, Sherer NA, Kim NH, Rajic E, Kaur D, Martini KM, Xue C, Goldenfeld N, and Kuhlman TE (2017). Activity and Effects of a Human LINE-1 Retrotransposon in Bacteria. In Submission
Martini KM, Kim NH, Xhu M, Sherer NA, Lee G, Goldenfeld N, and Kuhlman TE (2017). Dynamic Scaling of Bacterial Population Size. In Preparation
Sherer NH, Kim NH, Martini KM, Lee G, Goldenfeld N, and Kuhlman TE (2017). Quantitative Characterization of a Transposable Element Input-Output Function. In Preparation
Kim NH, Tas H, Nguyen CT, and Kuhlman TE (2017). DNA Condensation Alters Transcription Factor Specific Binding Energetics In Vivo. In Preparation
Atay O, Amosova O, Kuhlman TE, Cox EC, and Fresco JR (2017). DNA Self-catalytic Depurination Sequences Reduce Gene Expression and Result in Stochastic Switching in E. coli. In Review
Fraebel D, Mickalide H, Schnitkey D, Merritt J, Kuhlman TE, and Kuehn S (2017). Environment Determines Evolutionary Trajectory in a Constrained Phenotypic Space. eLife 10.7554/eLife.24669 [eLife]
Englaender JA, Jones JA, Cress BF, Kuhlman TE, Linhardt RJ, Koffas MA (2017). Effect of Genomic Integration Location on Heterologous Protein Expression and Metabolic Engineering in E. coli. ACS Synthetic Biology [PubMed]
Earnest TM, Cole J, Peterson J, Hallock M, Kuhlman TE, and Luthey-Schulten Z (2016). Ribosome Biogenesis in Replicating Cells: Integration of Experiment and Theory. Biopolymers 105(10): 735-51 [PubMed]
Kim NH, Lee G, Sherer NA, Martini KM, Goldenfeld N, and Kuhlman TE (2016). Real Time Transposable Element Activity in Individual Live Cells. Proc Natl Acad Sci 113(26): 7278-83 [PubMed]
Zhang J, Fei J, Leslie B, Young HK, Kuhlman TE, and Ha TJ (2015). Tandem Spinach Array for mRNA Imaging in Live Cells. Scientific Reports 5:17295. doi: 10.1038/srep17295 [PubMed]
Tas H, Nguyen CT, Patel R, Kim NH, and Kuhlman TE (2015). An Integrated System for Precise Genome Modification in Escherichia coli. PLoS ONE 10(9): e0136963. doi:10.1371/journal.pone.0136963 [PubMed]
Johnson-Chavarria EM, Agrawal U, Tanyeri M, Kuhlman TE, and Schroeder CM (2014). Automated Single Cell Microbioreactor for Monitoring Intracellular Dynamics and Cell Growth in Free Solution. Lab on a Chip, 14(15):2688-2697 [PubMed]
Kuhlman TE and Cox EC (2013). DNA Binding Protein Inhomogeneity in E. coli Modeled as Biphasic Facilitated Diffusion. Physical Review E, 88(2):022701 [PubMed]
Kuhlman TE and Cox EC (2012). Gene Location and DNA Density Determine Transcription Factor Distributions in Escherichia coli. Molecular Systems Biology, 8:610 [PubMed]
Kuhlman TE and Cox EC (2010). A Place for Everything: Chromosomal Integration of Large Constructs. Bioengineered Bugs, 1(4): pp. 298-301 [PubMed]
Kuhlman TE and Cox EC (2010). Site Specific Chromosomal Integration of Large Synthetic Constructs. Nucleic Acids Research Methods Online, PMID: 20047970 [PubMed]
Garcia HG, Sanchez A, Kuhlman TE, Phillips R, and Kondev J (2010). Transcriptional Regulation by the Numbers Redux: Experiments and Calculations that Surprise. Trends in Cell Biology, 20(12): pp. 723-733 [PubMed]
Kuhlman TE, Zhang Z, Saier MH, and Hwa T (2007). Combinatorial Transcriptional Control of the Lactose Operon of E. coli. Proc Natl Acad Sci, 104(14): pp. 6043-48 [PubMed]
Levine E, Zhang Z, Kuhlman TE, and Hwa T (2007). Quantitative Characteristics of Gene Regulation by Small RNA. PLoS Biology, 2(9) e229 [PubMed]
Bintu L, Buchler NE, Garcia H, Gerland U, Hwa T, Kondev J, Kuhlman TE, and Phillips R (2005). Transcriptional Regulation by the Numbers: Applications. Curr Op Genet Dev 15:125-135 [PubMed]